PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Home  BLAST  Prediction  RegMap  ATRM  Download  Help  About  Links
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000127.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 468aa    MW: 49530.1 Da    PI: 9.4922
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000127.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-054769123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C++C+k F r  nL+ H r H
  Itr_sc000127.1_g00001.1 47 FVCEICSKGFQRDQNLQLHRRGH 69
                             89*******************88 PP
2zf-C2H2110.0013122144123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              +kC+ C+k +  +s+ k H +t+
  Itr_sc000127.1_g00001.1 122 FKCERCSKKYAVRSDWKAHSKTC 144
                              89*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.5E-54669IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.66E-64669No hitNo description
SMARTSM003550.0364769IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8874769IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.0E-4110143IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.66E-6117142No hitNo description
SMARTSM00355140122142IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MAAPSEGETS AQLSVVSKRK RSLPGTPDPD AEVIALSPKS LLATNRFVCE ICSKGFQRDQ  60
NLQLHRRGHN LPWTLKQRGG KPKRRVYVCP ETTCVHHHPS RALGDLTGIK KHFCRKHGEK  120
KFKCERCSKK YAVRSDWKAH SKTCGTKEYR CDCGTIFSRK DSFITHRAFC DALAQESMRY  180
QPLEEPSKVA APPPTTTATS SSSPPPPPLT PSTGVLSPVV SVQSTGWSDL AESRLDLIEK  240
GLSKGKELMI AFGLNLAENQ SGLSQHKKPT LPPVPTAGAG VPLFSTSNVN GEALQSVFAS  300
STVAGDSRPP SAGSASAEPM FLSLSCPIYL SGNAASSVFP WAASRQFAAP SRPPAALSAT  360
ALLQKAAEIG ATSSHGSFLC SLGLATSSGS KPQDVKQENK SISSPSSPAM IFGNNPPTLD  420
FLGVGAGATT PPSFLGSMNN GSGAGVASTG DCWDDTSDRK FGFLQQNI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009612198.11e-132PREDICTED: zinc finger protein NUTCRACKER-like isoform X1
RefseqXP_009612196.11e-132PREDICTED: zinc finger protein NUTCRACKER-like isoform X1
SwissprotQ9LVQ71e-109IDD1_ARATH; Protein indeterminate-domain 1
TrEMBLM1A2F21e-127M1A2F2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000131741e-127(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-103C2H2 family protein